Index

_

__eq__() (academic_observatory_workflows.model.Repository method) (academic_observatory_workflows.openalex_telescope.release.Manifest method) (academic_observatory_workflows.openalex_telescope.release.ManifestEntry method) (academic_observatory_workflows.openalex_telescope.release.MergedId method) (academic_observatory_workflows.openalex_telescope.release.Meta method) (academic_observatory_workflows.pubmed_telescope.datafile.Datafile method) (academic_observatory_workflows.pubmed_telescope.tasks.PMID method) (academic_observatory_workflows.pubmed_telescope.tasks.PubmedUpdatefile method) (academic_observatory_workflows.unpaywall_telescope.release.Changefile method) __hash__() (academic_observatory_workflows.model.Repository method) (academic_observatory_workflows.pubmed_telescope.tasks.PMID method)

__str__() (academic_observatory_workflows.s5cmd.S5CmdCpConfig method) _bucket_credentials() (academic_observatory_workflows.s5cmd.S5Cmd method) _headers (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient attribute) _initialise_command() (academic_observatory_workflows.s5cmd.S5Cmd method) _key() (academic_observatory_workflows.model.Repository method) _transform_obj_data() (academic_observatory_workflows.pubmed_telescope.tasks.PubMedCustomEncoder method) _uri() (academic_observatory_workflows.s5cmd.S5Cmd method) _url() (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient method) _view (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient attribute)

A

academic_observatory (academic_observatory_workflows.config.Tag attribute) academic_observatory_workflows module academic_observatory_workflows.clearbit module academic_observatory_workflows.config module academic_observatory_workflows.crossref_events_telescope module academic_observatory_workflows.crossref_events_telescope.schema module academic_observatory_workflows.crossref_fundref_telescope module academic_observatory_workflows.crossref_fundref_telescope.release module academic_observatory_workflows.crossref_fundref_telescope.schema module academic_observatory_workflows.crossref_fundref_telescope.tasks module academic_observatory_workflows.crossref_fundref_telescope.telescope module academic_observatory_workflows.crossref_fundref_telescope.tests module academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks module academic_observatory_workflows.crossref_fundref_telescope.tests.test_telescope module academic_observatory_workflows.crossref_metadata_telescope module academic_observatory_workflows.crossref_metadata_telescope.release module academic_observatory_workflows.crossref_metadata_telescope.schema module academic_observatory_workflows.crossref_metadata_telescope.tasks module academic_observatory_workflows.crossref_metadata_telescope.telescope module academic_observatory_workflows.crossref_metadata_telescope.tests module academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks module academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope module academic_observatory_workflows.data_citation_corpus_telescope module academic_observatory_workflows.data_citation_corpus_telescope.schema module academic_observatory_workflows.datacite_telescope module academic_observatory_workflows.datacite_telescope.datacite_transform module academic_observatory_workflows.datacite_telescope.schema module academic_observatory_workflows.doi_workflow module academic_observatory_workflows.doi_workflow.queries module academic_observatory_workflows.doi_workflow.release module academic_observatory_workflows.doi_workflow.schema module academic_observatory_workflows.doi_workflow.sql module academic_observatory_workflows.doi_workflow.tasks module academic_observatory_workflows.doi_workflow.tests module academic_observatory_workflows.doi_workflow.tests.test_workflow module academic_observatory_workflows.doi_workflow.workflow module academic_observatory_workflows.github module academic_observatory_workflows.model module academic_observatory_workflows.oa_dashboard_workflow module academic_observatory_workflows.oa_dashboard_workflow.institution_ids module academic_observatory_workflows.oa_dashboard_workflow.release module academic_observatory_workflows.oa_dashboard_workflow.schema module academic_observatory_workflows.oa_dashboard_workflow.sql module academic_observatory_workflows.oa_dashboard_workflow.tasks module academic_observatory_workflows.oa_dashboard_workflow.tests module academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow module academic_observatory_workflows.oa_dashboard_workflow.workflow module academic_observatory_workflows.open_citations_telescope module academic_observatory_workflows.open_citations_telescope.schema module academic_observatory_workflows.openalex_telescope module academic_observatory_workflows.openalex_telescope.generate_schema module academic_observatory_workflows.openalex_telescope.release module academic_observatory_workflows.openalex_telescope.schema module academic_observatory_workflows.openalex_telescope.tasks module academic_observatory_workflows.openalex_telescope.telescope module academic_observatory_workflows.openalex_telescope.tests module academic_observatory_workflows.openalex_telescope.tests.test_telescope module academic_observatory_workflows.orcid_telescope module academic_observatory_workflows.orcid_telescope.batch module academic_observatory_workflows.orcid_telescope.release module academic_observatory_workflows.orcid_telescope.schema module academic_observatory_workflows.orcid_telescope.tasks module academic_observatory_workflows.orcid_telescope.telescope module academic_observatory_workflows.orcid_telescope.tests module academic_observatory_workflows.orcid_telescope.tests.test_tasks module academic_observatory_workflows.orcid_telescope.tests.test_telescope module academic_observatory_workflows.pubmed_telescope module academic_observatory_workflows.pubmed_telescope.datafile module academic_observatory_workflows.pubmed_telescope.release module academic_observatory_workflows.pubmed_telescope.schema module

academic_observatory_workflows.pubmed_telescope.tasks module academic_observatory_workflows.pubmed_telescope.telescope module academic_observatory_workflows.pubmed_telescope.tests module academic_observatory_workflows.pubmed_telescope.tests.test_tasks module academic_observatory_workflows.pubmed_telescope.tests.test_telescope module academic_observatory_workflows.ror_telescope module academic_observatory_workflows.ror_telescope.release module academic_observatory_workflows.ror_telescope.schema module academic_observatory_workflows.ror_telescope.tasks module academic_observatory_workflows.ror_telescope.telescope module academic_observatory_workflows.ror_telescope.tests module academic_observatory_workflows.ror_telescope.tests.test_tasks module academic_observatory_workflows.ror_telescope.tests.test_telescope module academic_observatory_workflows.s5cmd module academic_observatory_workflows.scihub_telescope module academic_observatory_workflows.scihub_telescope.schema module academic_observatory_workflows.scopus_telescope module academic_observatory_workflows.scopus_telescope.release module academic_observatory_workflows.scopus_telescope.schema module academic_observatory_workflows.scopus_telescope.tasks module academic_observatory_workflows.scopus_telescope.telescope module academic_observatory_workflows.scopus_telescope.tests module academic_observatory_workflows.scopus_telescope.tests.test_tasks module academic_observatory_workflows.scopus_telescope.tests.test_telescope module academic_observatory_workflows.tests module academic_observatory_workflows.tests.test_clearbit module academic_observatory_workflows.tests.test_github module academic_observatory_workflows.tests.test_s5cmd module academic_observatory_workflows.tests.test_wikipedia module academic_observatory_workflows.tests.test_zenodo module academic_observatory_workflows.unpaywall_telescope module academic_observatory_workflows.unpaywall_telescope.release module academic_observatory_workflows.unpaywall_telescope.schema module academic_observatory_workflows.unpaywall_telescope.tasks module academic_observatory_workflows.unpaywall_telescope.telescope module academic_observatory_workflows.unpaywall_telescope.tests module academic_observatory_workflows.unpaywall_telescope.tests.test_tasks module academic_observatory_workflows.unpaywall_telescope.tests.test_telescope module academic_observatory_workflows.web_of_science_telescope module academic_observatory_workflows.web_of_science_telescope.schema module academic_observatory_workflows.wikipedia module academic_observatory_workflows.zenodo module access_credentials (academic_observatory_workflows.s5cmd.S5Cmd attribute) access_token (academic_observatory_workflows.zenodo.Zenodo attribute) access_type (academic_observatory_workflows.model.Paper property) AccessType (class in academic_observatory_workflows.model) add_attributes() (in module academic_observatory_workflows.pubmed_telescope.tasks) add_dataset_release() (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) (in module academic_observatory_workflows.doi_workflow.tasks) (in module academic_observatory_workflows.openalex_telescope.tasks) (in module academic_observatory_workflows.orcid_telescope.tasks) (in module academic_observatory_workflows.scopus_telescope.tasks) (in module academic_observatory_workflows.unpaywall_telescope.tasks) add_dataset_releases() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.pubmed_telescope.tasks) (in module academic_observatory_workflows.ror_telescope.tasks) add_dummy_dag_model() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) add_funders_relationships() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) add_wiki_descriptions() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) aggregate_events() (in module academic_observatory_workflows.model) Aggregation (class in academic_observatory_workflows.doi_workflow.queries) aggregation_field (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) AGGREGATIONS (in module academic_observatory_workflows.doi_workflow.workflow) aggregator (academic_observatory_workflows.model.OtherPlatformCategories attribute) api_bq_dataset_id (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) api_key (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient attribute) assert_aggregate() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) assert_doi() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) assert_doi_affiliation() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) assert_doi_affiliations() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) assert_doi_events() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) assert_sub_fields() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) Author (class in academic_observatory_workflows.model) AuthorList (in module academic_observatory_workflows.model) authors (academic_observatory_workflows.model.ObservatoryDataset attribute) (academic_observatory_workflows.model.Paper attribute) aws_access_key_id (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope attribute) aws_conn_id (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTransferOrcid attribute) aws_key (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils attribute) aws_openalex_bucket (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) aws_orcid_conn_id (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) aws_orcid_key() (in module academic_observatory_workflows.orcid_telescope.tasks) aws_region_name (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope attribute) (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope attribute) aws_secret_access_key (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope attribute) aws_to_gcs_transfer() (in module academic_observatory_workflows.openalex_telescope.tasks)

B

bad_list_fields (in module academic_observatory_workflows.pubmed_telescope.tasks) baseline (academic_observatory_workflows.pubmed_telescope.datafile.Datafile attribute) baseline_bq_load() (in module academic_observatory_workflows.pubmed_telescope.tasks) baseline_download() (in module academic_observatory_workflows.pubmed_telescope.tasks) baseline_files (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease property) baseline_path (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.PubMedTest attribute) baseline_table_description (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) baseline_transform() (in module academic_observatory_workflows.pubmed_telescope.tasks) baseline_upload_date (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease attribute) baseline_upload_downloaded() (in module academic_observatory_workflows.pubmed_telescope.tasks) baseline_upload_transformed() (in module academic_observatory_workflows.pubmed_telescope.tasks) BATCH_REGEX (in module academic_observatory_workflows.orcid_telescope.batch) batch_size (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) batch_str (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) bins (academic_observatory_workflows.oa_dashboard_workflow.tasks.Histogram attribute) black (academic_observatory_workflows.model.AccessType attribute) blob_uris (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch property) both (academic_observatory_workflows.model.COKIOpenAccess attribute) bq_agg_dataset_id (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) bq_compare_schemas() (in module academic_observatory_workflows.openalex_telescope.tasks) bq_create_main_table_snapshot() (in module academic_observatory_workflows.orcid_telescope.tasks) (in module academic_observatory_workflows.unpaywall_telescope.tasks) bq_dashboards_dataset_id (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) bq_dataset_description (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) bq_dataset_id (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) bq_delete_records() (in module academic_observatory_workflows.orcid_telescope.tasks) bq_delete_table_id (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) bq_delete_table_name (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) bq_intermediate_dataset_id (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) bq_load() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) (in module academic_observatory_workflows.ror_telescope.tasks) (in module academic_observatory_workflows.scopus_telescope.tasks)

bq_load_delete_table() (in module academic_observatory_workflows.orcid_telescope.tasks) bq_load_main_table() (in module academic_observatory_workflows.orcid_telescope.tasks) bq_load_observatory_dataset() (in module academic_observatory_workflows.model) bq_load_table() (in module academic_observatory_workflows.openalex_telescope.tasks) bq_load_upsert_table() (in module academic_observatory_workflows.orcid_telescope.tasks) bq_main_table_id (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) bq_main_table_name (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) bq_oa_dashboard_dataset_id (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) bq_observatory_dataset_id (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) bq_query_to_gcs() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) bq_ror_dataset_id (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) bq_set_table_expiry() (in module academic_observatory_workflows.openalex_telescope.tasks) bq_settings_dataset_id (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) bq_snapshot_table_id (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) bq_table_id (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity property) bq_table_name (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) bq_unpaywall_dataset_id (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) bq_update_table_expiration() (in module academic_observatory_workflows.pubmed_telescope.tasks) bq_upsert_records() (in module academic_observatory_workflows.orcid_telescope.tasks) bq_upsert_table_id (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) bq_upsert_table_name (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) branch_baseline_or_updatefiles() (in module academic_observatory_workflows.pubmed_telescope.tasks) bronze (academic_observatory_workflows.model.AccessType attribute) bucket_name (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow attribute) build_datasets() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) build_path (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease property) build_query() (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtility static method)

C

calc_percent() (in module academic_observatory_workflows.model) CALL_LIMIT (academic_observatory_workflows.scopus_telescope.tasks.ScopusClientThrottleLimits attribute) CALL_PERIOD (academic_observatory_workflows.scopus_telescope.tasks.ScopusClientThrottleLimits attribute) catchup (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) category (academic_observatory_workflows.model.Repository attribute) change_pubmed_list_structure() (in module academic_observatory_workflows.pubmed_telescope.tasks) Changefile (class in academic_observatory_workflows.unpaywall_telescope.release) changefile_date (academic_observatory_workflows.unpaywall_telescope.release.Changefile attribute) changefile_download_url() (in module academic_observatory_workflows.unpaywall_telescope.tasks) changefile_release (academic_observatory_workflows.unpaywall_telescope.release.Changefile attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) changefiles (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) CHANGEFILES_DOWNLOAD_URL (in module academic_observatory_workflows.unpaywall_telescope.tasks) CHANGEFILES_URL (in module academic_observatory_workflows.unpaywall_telescope.tasks) changefiles_url() (in module academic_observatory_workflows.unpaywall_telescope.tasks) check_directory() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) (in module academic_observatory_workflows.openalex_telescope.generate_schema) check_release_exists() (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) checksum (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) cited_by (academic_observatory_workflows.model.Paper attribute) clean_downloads() (in module academic_observatory_workflows.orcid_telescope.tasks) clean_string_or_bool() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) clean_url() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) cleanup_workflow() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) (in module academic_observatory_workflows.orcid_telescope.tasks) (in module academic_observatory_workflows.pubmed_telescope.tasks) (in module academic_observatory_workflows.ror_telescope.tasks) (in module academic_observatory_workflows.scopus_telescope.tasks) (in module academic_observatory_workflows.unpaywall_telescope.tasks) clear_task_queue() (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtility static method) clearbit_download_logo() (in module academic_observatory_workflows.clearbit) client (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtilWorker attribute) client_id (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtilWorker attribute) closed (academic_observatory_workflows.model.COKIOpenAccess attribute) cloud_workspace (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease attribute) (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.release.ScopusRelease attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute)

code (academic_observatory_workflows.scopus_telescope.tests.test_tasks.MockUrlResponse attribute) COKIOpenAccess (class in academic_observatory_workflows.model) compare_schemas() (in module academic_observatory_workflows.openalex_telescope.tasks) conceptrecid (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) construct_module_path() (in module academic_observatory_workflows.config) content_length (academic_observatory_workflows.openalex_telescope.release.MergedId attribute) (academic_observatory_workflows.openalex_telescope.release.Meta attribute) coordinates (academic_observatory_workflows.model.Institution attribute) country (academic_observatory_workflows.model.Institution attribute) (academic_observatory_workflows.oa_dashboard_workflow.tasks.Stats attribute) country_code (academic_observatory_workflows.model.Funder attribute) (academic_observatory_workflows.model.Institution attribute) country_code_2 (academic_observatory_workflows.model.Institution attribute) country_table_id() (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease method) create_aggregate_table() (in module academic_observatory_workflows.doi_workflow.tasks) create_dag() (in module academic_observatory_workflows.crossref_fundref_telescope.telescope) (in module academic_observatory_workflows.crossref_metadata_telescope.telescope) (in module academic_observatory_workflows.doi_workflow.workflow) (in module academic_observatory_workflows.oa_dashboard_workflow.workflow) (in module academic_observatory_workflows.openalex_telescope.telescope) (in module academic_observatory_workflows.orcid_telescope.telescope) (in module academic_observatory_workflows.pubmed_telescope.telescope) (in module academic_observatory_workflows.ror_telescope.telescope) (in module academic_observatory_workflows.scopus_telescope.telescope) (in module academic_observatory_workflows.unpaywall_telescope.telescope) create_dataset() (in module academic_observatory_workflows.orcid_telescope.tasks) create_datasets() (in module academic_observatory_workflows.doi_workflow.tasks) create_entity_tables() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) create_intermediate_table() (in module academic_observatory_workflows.doi_workflow.tasks) create_manifests() (in module academic_observatory_workflows.orcid_telescope.tasks) create_new_version() (academic_observatory_workflows.tests.test_zenodo.MockZenodo method) (academic_observatory_workflows.zenodo.Zenodo method) create_openalex_dataset() (in module academic_observatory_workflows.openalex_telescope.tests.test_telescope) create_orcid_batch_manifest() (in module academic_observatory_workflows.orcid_telescope.tasks) create_repo_institution_to_ror_table() (in module academic_observatory_workflows.doi_workflow.tasks) create_ror_hierarchy_table() (in module academic_observatory_workflows.doi_workflow.tasks) create_snapshot() (in module academic_observatory_workflows.pubmed_telescope.tasks) crossref_base_url (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) crossref_metadata_conn_id (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) CrossrefFundrefRelease (class in academic_observatory_workflows.crossref_fundref_telescope.release) CrossrefMetadataRelease (class in academic_observatory_workflows.crossref_metadata_telescope.release)

D

dag_id (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_fundref_telescope.tests.test_telescope.TestCrossrefFundrefTelescope attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope.TestCrossrefMetadataTelescope attribute) (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow attribute) (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope attribute) (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.TestPubMedTelescope attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.tests.test_telescope.TestRorTelescope attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.tests.test_telescope.TestScopusTelescope attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.tests.test_telescope.TestUnpaywallTelescope attribute) DagParams (class in academic_observatory_workflows.crossref_fundref_telescope.telescope) (class in academic_observatory_workflows.crossref_metadata_telescope.telescope) (class in academic_observatory_workflows.doi_workflow.workflow) (class in academic_observatory_workflows.oa_dashboard_workflow.workflow) (class in academic_observatory_workflows.openalex_telescope.telescope) (class in academic_observatory_workflows.orcid_telescope.telescope) (class in academic_observatory_workflows.pubmed_telescope.telescope) (class in academic_observatory_workflows.ror_telescope.telescope) (class in academic_observatory_workflows.scopus_telescope.telescope) (class in academic_observatory_workflows.unpaywall_telescope.telescope) data (academic_observatory_workflows.oa_dashboard_workflow.tasks.Histogram attribute) (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusJsonParser attribute) (academic_observatory_workflows.tests.test_zenodo.MockResponse attribute) data_bucket (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) data_file_pattern() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) data_interval_end (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease attribute) (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease attribute) (academic_observatory_workflows.doi_workflow.release.DOIRelease attribute) (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) (academic_observatory_workflows.scopus_telescope.release.ScopusRelease attribute) data_interval_start (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease attribute) (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease attribute) (academic_observatory_workflows.doi_workflow.release.DOIRelease attribute) (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) (academic_observatory_workflows.scopus_telescope.release.ScopusRelease attribute) data_location (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow attribute) (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils attribute) (academic_observatory_workflows.tests.test_s5cmd.TestS5Cmd attribute) (academic_observatory_workflows.unpaywall_telescope.tests.test_telescope.TestUnpaywallTelescope attribute) data_quality (academic_observatory_workflows.config.Tag attribute) data_uri (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity property) Datafile (class in academic_observatory_workflows.pubmed_telescope.datafile) datafile_date (academic_observatory_workflows.pubmed_telescope.datafile.Datafile attribute) datafile_list (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease attribute) datafile_release (academic_observatory_workflows.pubmed_telescope.datafile.Datafile attribute) (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease attribute) DATASET_API_ENTITY_ID (in module academic_observatory_workflows.openalex_telescope.tasks) dataset_description (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute)

dataset_id (academic_observatory_workflows.doi_workflow.queries.Table attribute) date_between_dates() (in module academic_observatory_workflows.model) DEFAULT_KEY_QUOTA (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtilWorker attribute) delete_blob_glob (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) delete_file() (academic_observatory_workflows.tests.test_zenodo.MockZenodo method) (academic_observatory_workflows.zenodo.Zenodo method) delete_files (academic_observatory_workflows.orcid_telescope.release.OrcidRelease property) delete_schema_file_path (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) delete_table (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) delete_table_description (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) delete_table_uri (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) deletes (academic_observatory_workflows.pubmed_telescope.tasks.PubmedUpdatefile attribute) descriptions_table_id() (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease method) doi (academic_observatory_workflows.model.Funder attribute) (academic_observatory_workflows.model.Paper attribute) doi_dag_id (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) DOI_FIXTURES_FOLDER (in module academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow) doi_prefix (academic_observatory_workflows.model.Publisher attribute) DOI_SCHEMA_FOLDER (in module academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow) DOIRelease (class in academic_observatory_workflows.doi_workflow.release) domain (academic_observatory_workflows.model.OtherPlatformCategories attribute) download() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) (in module academic_observatory_workflows.openalex_telescope.tasks) (in module academic_observatory_workflows.orcid_telescope.tasks) (in module academic_observatory_workflows.ror_telescope.tasks) (in module academic_observatory_workflows.scopus_telescope.tasks) download_assets() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) download_batch_dir (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) download_blob_name (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease property) (academic_observatory_workflows.ror_telescope.release.RorRelease property) download_data() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) download_datafiles() (in module academic_observatory_workflows.pubmed_telescope.tasks) download_dir (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) download_error_file (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) download_file_name (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease attribute) (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease attribute) (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) download_file_path (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease property) (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease property) (academic_observatory_workflows.pubmed_telescope.datafile.Datafile property) (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) (academic_observatory_workflows.unpaywall_telescope.release.Changefile property) download_file_regex (academic_observatory_workflows.scopus_telescope.release.ScopusRelease attribute) download_from_bucket() (academic_observatory_workflows.s5cmd.S5Cmd method) download_institution_logos() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) download_log_file (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) download_parallel() (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtility static method) download_path (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestDownload attribute) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope.TestCrossrefMetadataTelescope attribute) download_period() (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtility static method) download_uri (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease property) (academic_observatory_workflows.ror_telescope.release.RorRelease property) download_url (academic_observatory_workflows.oa_dashboard_workflow.tasks.ZenodoVersion attribute) download_worker() (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtility static method) downloaded_records (academic_observatory_workflows.orcid_telescope.release.OrcidRelease property) dt_fmt (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestOaDashboardWorkflow attribute) dummy_release() (in module academic_observatory_workflows.orcid_telescope.tests.test_tasks)

E

earliest_date (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) encode() (academic_observatory_workflows.pubmed_telescope.tasks.PubMedCustomEncoder method) end_year (academic_observatory_workflows.oa_dashboard_workflow.tasks.Stats attribute) END_YEAR (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) endpoint_id (academic_observatory_workflows.model.Repository attribute) entity_name (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) entity_names (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) entity_types (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) EntityHistograms (class in academic_observatory_workflows.oa_dashboard_workflow.tasks) EntityStats (class in academic_observatory_workflows.oa_dashboard_workflow.tasks) entries (academic_observatory_workflows.openalex_telescope.release.Manifest attribute) (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity property) Event (class in academic_observatory_workflows.model) event_date (academic_observatory_workflows.model.Event attribute)

EVENT_TYPES (in module academic_observatory_workflows.model) events (academic_observatory_workflows.model.Paper attribute) EventsList (in module academic_observatory_workflows.model) existing_records (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch property) expected_records (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch property) expire_previous_version() (in module academic_observatory_workflows.openalex_telescope.tasks) export_tables() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) extract() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) extract_file_name (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease attribute) extract_file_path (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease property) (academic_observatory_workflows.unpaywall_telescope.release.Changefile property) extract_file_regex (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) extract_files_regex (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease attribute)

F

fetch_entities() (in module academic_observatory_workflows.openalex_telescope.tasks) fetch_institution_logo() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) fetch_institution_logos() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) fetch_manifest() (in module academic_observatory_workflows.openalex_telescope.tasks) fetch_merged_ids() (in module academic_observatory_workflows.openalex_telescope.tasks) fetch_release() (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) (in module academic_observatory_workflows.orcid_telescope.tasks) (in module academic_observatory_workflows.pubmed_telescope.tasks) (in module academic_observatory_workflows.scopus_telescope.tasks) (in module academic_observatory_workflows.unpaywall_telescope.tasks) fetch_releases() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.ror_telescope.tasks) fetch_ror_affiliations() (in module academic_observatory_workflows.doi_workflow.queries) fetch_wikipedia_descriptions() (in module academic_observatory_workflows.wikipedia) fetch_wikipedia_descriptions_batch() (in module academic_observatory_workflows.wikipedia) fetch_zenodo_versions() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) FieldOfStudy (class in academic_observatory_workflows.model) FieldOfStudyList (in module academic_observatory_workflows.model) fields_of_study (academic_observatory_workflows.model.ObservatoryDataset attribute) (academic_observatory_workflows.model.Paper attribute) file_index (academic_observatory_workflows.pubmed_telescope.datafile.Datafile attribute) file_name (academic_observatory_workflows.openalex_telescope.release.ManifestEntry property) (academic_observatory_workflows.openalex_telescope.release.MergedId property) file_type (academic_observatory_workflows.pubmed_telescope.datafile.Datafile attribute) filename (academic_observatory_workflows.pubmed_telescope.datafile.Datafile attribute) (academic_observatory_workflows.unpaywall_telescope.release.Changefile attribute) filter_non_empty_dicts() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) first_run (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.PubMedTest attribute) first_run_folder (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) first_run_main_table (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) first_run_records (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) FIXTURES_FOLDER (in module academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks) (in module academic_observatory_workflows.crossref_fundref_telescope.tests.test_telescope) (in module academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope) (in module academic_observatory_workflows.doi_workflow.tests.test_workflow) (in module academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow) (in module academic_observatory_workflows.openalex_telescope.tests.test_telescope) (in module academic_observatory_workflows.orcid_telescope.tests.test_tasks) (in module academic_observatory_workflows.orcid_telescope.tests.test_telescope) (in module academic_observatory_workflows.pubmed_telescope.tests.test_tasks) (in module academic_observatory_workflows.pubmed_telescope.tests.test_telescope) (in module academic_observatory_workflows.ror_telescope.tests.test_tasks) (in module academic_observatory_workflows.ror_telescope.tests.test_telescope) (in module academic_observatory_workflows.scopus_telescope.tests.test_tasks) (in module academic_observatory_workflows.scopus_telescope.tests.test_telescope) (in module academic_observatory_workflows.tests.test_clearbit) (in module academic_observatory_workflows.tests.test_wikipedia) (in module academic_observatory_workflows.unpaywall_telescope.tests.test_tasks) (in module academic_observatory_workflows.unpaywall_telescope.tests.test_telescope)

flatten_dir (academic_observatory_workflows.s5cmd.S5CmdCpConfig attribute) flatten_schema() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) (in module academic_observatory_workflows.openalex_telescope.tasks) format_geography_point() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) from_dict() (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease static method) (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease static method) (academic_observatory_workflows.doi_workflow.release.DOIRelease static method) (academic_observatory_workflows.model.Repository static method) (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease static method) (academic_observatory_workflows.oa_dashboard_workflow.tasks.ZenodoVersion static method) (academic_observatory_workflows.openalex_telescope.release.Manifest static method) (academic_observatory_workflows.openalex_telescope.release.ManifestEntry static method) (academic_observatory_workflows.openalex_telescope.release.MergedId static method) (academic_observatory_workflows.openalex_telescope.release.Meta static method) (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity static method) (academic_observatory_workflows.orcid_telescope.release.OrcidRelease static method) (academic_observatory_workflows.pubmed_telescope.datafile.Datafile method) (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease static method) (academic_observatory_workflows.pubmed_telescope.tasks.PMID method) (academic_observatory_workflows.pubmed_telescope.tasks.PubmedUpdatefile method) (academic_observatory_workflows.ror_telescope.release.RorRelease static method) (academic_observatory_workflows.scopus_telescope.release.ScopusRelease static method) (academic_observatory_workflows.unpaywall_telescope.release.Changefile static method) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease static method) ftp_host_url (academic_observatory_workflows.config.TestConfig attribute) ftp_port (academic_observatory_workflows.config.TestConfig attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.PubMedTest attribute) ftp_server_url (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.PubMedTest attribute) Funder (class in academic_observatory_workflows.model) FunderList (in module academic_observatory_workflows.model) funders (academic_observatory_workflows.model.ObservatoryDataset attribute) (academic_observatory_workflows.model.Paper attribute) funding_body_subtype (academic_observatory_workflows.model.Funder attribute) FUNDING_BODY_SUBTYPES (in module academic_observatory_workflows.model) funding_body_type (academic_observatory_workflows.model.Funder attribute) FUNDING_BODY_TYPES (in module academic_observatory_workflows.model) FUNDREF_COUNTRY_CODES (in module academic_observatory_workflows.model) FUNDREF_REGIONS (in module academic_observatory_workflows.model)

G

gcp_data_location (academic_observatory_workflows.config.TestConfig attribute) gcp_project_id (academic_observatory_workflows.config.TestConfig attribute) gcs_openalex_data_uri (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) generate_schema() (in module academic_observatory_workflows.openalex_telescope.generate_schema) generate_schema_for_dataset() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) generated_schema_path (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity property) get() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient.MockMetadata class method) get_affiliations() (academic_observatory_workflows.scopus_telescope.tasks.ScopusJsonParser static method) get_api_key() (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) get_authors() (academic_observatory_workflows.scopus_telescope.tasks.ScopusJsonParser static method) get_aws_key() (in module academic_observatory_workflows.openalex_telescope.tasks) get_chunks() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) get_deposition() (academic_observatory_workflows.tests.test_zenodo.MockZenodo method) (academic_observatory_workflows.zenodo.Zenodo method) get_entity() (in module academic_observatory_workflows.openalex_telescope.tasks) get_identifier_list() (academic_observatory_workflows.scopus_telescope.tasks.ScopusJsonParser static method) get_next_page_url() (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient static method) get_reset_date_from_error() (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient static method) get_snapshot_date() (in module academic_observatory_workflows.doi_workflow.queries) get_snapshot_file_name() (in module academic_observatory_workflows.unpaywall_telescope.tasks) get_table_expiry() (in module academic_observatory_workflows.openalex_telescope.tests.test_telescope) get_task_id() (in module academic_observatory_workflows.openalex_telescope.tasks) get_unpaywall_changefiles() (in module academic_observatory_workflows.unpaywall_telescope.tasks) get_versions() (academic_observatory_workflows.tests.test_zenodo.MockZenodo method) (academic_observatory_workflows.zenodo.Zenodo method)

get_wikipedia_title() (in module academic_observatory_workflows.wikipedia) getcode() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.MockUrlResponse method) getheader() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.MockUrlResponse method) github_conn_id (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) gitlab_pool_description (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) gitlab_pool_name (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) gitlab_pool_slots (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) gke_cluster_connection (academic_observatory_workflows.config.TestConfig attribute) gke_conn_id (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) gke_image (academic_observatory_workflows.config.TestConfig attribute) gke_namespace (academic_observatory_workflows.config.TestConfig attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) gke_params (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) gke_params_map (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) gke_volume_name (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) gke_volume_size (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) gold (academic_observatory_workflows.model.AccessType attribute) gold_doaj (academic_observatory_workflows.model.AccessType attribute) green (academic_observatory_workflows.model.AccessType attribute) green_only (academic_observatory_workflows.model.AccessType attribute) grid_id (academic_observatory_workflows.model.Institution attribute) group_by_time_field (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute)

H

Histogram (class in academic_observatory_workflows.oa_dashboard_workflow.tasks) histograms (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityStats attribute) host (academic_observatory_workflows.zenodo.Zenodo attribute) http_header (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute)

http_host_url (academic_observatory_workflows.config.TestConfig attribute) http_port (academic_observatory_workflows.config.TestConfig attribute) hybrid (academic_observatory_workflows.model.AccessType attribute) (academic_observatory_workflows.model.PublisherCategories attribute)

I

id (academic_observatory_workflows.model.Author attribute) (academic_observatory_workflows.model.FieldOfStudy attribute) (academic_observatory_workflows.model.Funder attribute) (academic_observatory_workflows.model.Institution attribute) (academic_observatory_workflows.model.Journal attribute) (academic_observatory_workflows.model.Paper attribute) (academic_observatory_workflows.model.Publisher attribute) in_scihub (academic_observatory_workflows.model.Paper attribute) in_unpaywall (academic_observatory_workflows.model.Paper attribute) INCLUSION_THRESHOLD (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) init_logging() (in module academic_observatory_workflows.pubmed_telescope.tasks) input_data_file (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms attribute) input_project_id (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease attribute) input_table_task_ids (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) inputs (academic_observatory_workflows.doi_workflow.queries.SQLQuery attribute) institution (academic_observatory_workflows.model.Author attribute) (academic_observatory_workflows.model.OtherPlatformCategories attribute) (academic_observatory_workflows.oa_dashboard_workflow.tasks.Stats attribute)

Institution (class in academic_observatory_workflows.model) institution_ids (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusJsonParser attribute) INSTITUTION_IDS (in module academic_observatory_workflows.oa_dashboard_workflow.institution_ids) institution_ids_table_id() (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease method) InstitutionList (in module academic_observatory_workflows.model) institutions (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow attribute) (academic_observatory_workflows.model.ObservatoryDataset attribute) intermediate_path (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease property) invalid_key_orcid (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) is_first_run (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) is_lat_lng_valid() (in module academic_observatory_workflows.ror_telescope.tasks)

J

journal (academic_observatory_workflows.model.Paper attribute) Journal (class in academic_observatory_workflows.model)

journals (academic_observatory_workflows.model.Publisher attribute) json() (academic_observatory_workflows.tests.test_zenodo.MockResponse method)

L

last_updated (academic_observatory_workflows.oa_dashboard_workflow.tasks.Stats attribute) latest_modified_record_date() (in module academic_observatory_workflows.orcid_telescope.tasks) level (academic_observatory_workflows.model.FieldOfStudy attribute) license (academic_observatory_workflows.model.Journal attribute) LICENSES (in module academic_observatory_workflows.model) list_jsonl_files() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) list_releases() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) list_ror_records() (in module academic_observatory_workflows.ror_telescope.tasks) load_changefiles_bq_load() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_changefiles_bq_upsert() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_changefiles_download() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_changefiles_extract() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_changefiles_transform() (in module academic_observatory_workflows.unpaywall_telescope.tasks)

load_changefiles_upload() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_changefiles_upload_downloaded() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_json() (in module academic_observatory_workflows.openalex_telescope.tasks) load_snapshot_bq_load() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_snapshot_download() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_snapshot_extract() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_snapshot_split_main_table_file() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_snapshot_transform() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_snapshot_upload_downloaded() (in module academic_observatory_workflows.unpaywall_telescope.tasks) load_snapshot_upload_main_table_files() (in module academic_observatory_workflows.unpaywall_telescope.tasks) log_path (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) login_to_ftp() (in module academic_observatory_workflows.pubmed_telescope.tasks) logos_table_id() (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease method)

M

main_table_file_path (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) main_table_files_regex (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) main_table_uri (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) make_aggregate_table() (in module academic_observatory_workflows.model) make_authors() (in module academic_observatory_workflows.model) make_crossref_events() (in module academic_observatory_workflows.model) make_crossref_fundref() (in module academic_observatory_workflows.model) make_crossref_metadata() (in module academic_observatory_workflows.model) make_doi() (in module academic_observatory_workflows.model) make_doi_countries() (in module academic_observatory_workflows.model) make_doi_events() (in module academic_observatory_workflows.model) make_doi_funders() (in module academic_observatory_workflows.model) make_doi_institutions() (in module academic_observatory_workflows.model) make_doi_journals() (in module academic_observatory_workflows.model) make_doi_publishers() (in module academic_observatory_workflows.model) make_doi_regions() (in module academic_observatory_workflows.model) make_doi_subregions() (in module academic_observatory_workflows.model) make_doi_table() (in module academic_observatory_workflows.model) make_draft_version() (in module academic_observatory_workflows.zenodo) make_draft_zenodo_version() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) make_entity_stats() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) make_expected_build_files() (in module academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow) make_fields_of_study() (in module academic_observatory_workflows.model) make_first_run_message() (in module academic_observatory_workflows.openalex_telescope.tasks) make_funders() (in module academic_observatory_workflows.model) make_logo_url() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) make_no_merged_ids_msg() (in module academic_observatory_workflows.openalex_telescope.tasks) make_no_updated_data_msg() (in module academic_observatory_workflows.openalex_telescope.tasks) make_observatory_dataset() (in module academic_observatory_workflows.model) make_open_citations() (in module academic_observatory_workflows.model) make_openalex_dataset() (in module academic_observatory_workflows.model) make_orcid() (in module academic_observatory_workflows.model) make_papers() (in module academic_observatory_workflows.model) make_publishers() (in module academic_observatory_workflows.model) make_pubmed() (in module academic_observatory_workflows.model) make_query() (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtility static method) make_scihub() (in module academic_observatory_workflows.model) make_sensors() (in module academic_observatory_workflows.doi_workflow.tasks) make_snapshot_url() (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) make_sql_queries() (in module academic_observatory_workflows.doi_workflow.queries) make_unpaywall() (in module academic_observatory_workflows.model) make_url() (academic_observatory_workflows.zenodo.Zenodo method) manifest (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) Manifest (class in academic_observatory_workflows.openalex_telescope.release) manifest_file (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) MANIFEST_HEADER (in module academic_observatory_workflows.orcid_telescope.tasks) ManifestEntry (class in academic_observatory_workflows.openalex_telescope.release) master_manifest_file (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) max (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityStats attribute) max_active_runs (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) max_download_attempt (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) max_fetch_threads (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) max_processes (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) MAX_QUERIES (in module academic_observatory_workflows.doi_workflow.queries) MAX_REPOSITORIES (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) MAX_RESULTS (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient attribute) max_workers (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) maxDiff (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks attribute) (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow attribute) (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestOaDashboardWorkflow attribute) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks attribute) (academic_observatory_workflows.scopus_telescope.tests.test_telescope.TestScopusTelescope attribute) median (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityStats attribute) merge_schema_maps() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) (in module academic_observatory_workflows.openalex_telescope.tasks) merge_upserts_and_deletes() (in module academic_observatory_workflows.pubmed_telescope.tasks) merged_delete_file_path (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease property) merged_delete_transfer_uri (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease property) merged_ids (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) merged_upsert_file_path (academic_observatory_workflows.pubmed_telescope.datafile.Datafile property) merged_upsert_uri_blob_pattern (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease property) MergedId (class in academic_observatory_workflows.openalex_telescope.release) meta (academic_observatory_workflows.openalex_telescope.release.Manifest attribute) (academic_observatory_workflows.openalex_telescope.release.ManifestEntry attribute) Meta (class in academic_observatory_workflows.openalex_telescope.release) min (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityStats attribute) mismatched_orcid (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) missing_records (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch property) mocked_files (academic_observatory_workflows.ror_telescope.tests.test_telescope.TestRorTelescope attribute) MockResponse (class in academic_observatory_workflows.tests.test_zenodo) MockUrlResponse (class in academic_observatory_workflows.scopus_telescope.tests.test_tasks) MockZenodo (class in academic_observatory_workflows.tests.test_zenodo) module academic_observatory_workflows academic_observatory_workflows.clearbit academic_observatory_workflows.config academic_observatory_workflows.crossref_events_telescope academic_observatory_workflows.crossref_events_telescope.schema academic_observatory_workflows.crossref_fundref_telescope academic_observatory_workflows.crossref_fundref_telescope.release academic_observatory_workflows.crossref_fundref_telescope.schema academic_observatory_workflows.crossref_fundref_telescope.tasks academic_observatory_workflows.crossref_fundref_telescope.telescope academic_observatory_workflows.crossref_fundref_telescope.tests academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks academic_observatory_workflows.crossref_fundref_telescope.tests.test_telescope academic_observatory_workflows.crossref_metadata_telescope academic_observatory_workflows.crossref_metadata_telescope.release academic_observatory_workflows.crossref_metadata_telescope.schema academic_observatory_workflows.crossref_metadata_telescope.tasks academic_observatory_workflows.crossref_metadata_telescope.telescope academic_observatory_workflows.crossref_metadata_telescope.tests academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope academic_observatory_workflows.data_citation_corpus_telescope academic_observatory_workflows.data_citation_corpus_telescope.schema academic_observatory_workflows.datacite_telescope academic_observatory_workflows.datacite_telescope.datacite_transform academic_observatory_workflows.datacite_telescope.schema academic_observatory_workflows.doi_workflow academic_observatory_workflows.doi_workflow.queries academic_observatory_workflows.doi_workflow.release academic_observatory_workflows.doi_workflow.schema academic_observatory_workflows.doi_workflow.sql academic_observatory_workflows.doi_workflow.tasks academic_observatory_workflows.doi_workflow.tests academic_observatory_workflows.doi_workflow.tests.test_workflow academic_observatory_workflows.doi_workflow.workflow academic_observatory_workflows.github academic_observatory_workflows.model academic_observatory_workflows.oa_dashboard_workflow academic_observatory_workflows.oa_dashboard_workflow.institution_ids academic_observatory_workflows.oa_dashboard_workflow.release academic_observatory_workflows.oa_dashboard_workflow.schema academic_observatory_workflows.oa_dashboard_workflow.sql academic_observatory_workflows.oa_dashboard_workflow.tasks academic_observatory_workflows.oa_dashboard_workflow.tests academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow academic_observatory_workflows.oa_dashboard_workflow.workflow academic_observatory_workflows.open_citations_telescope academic_observatory_workflows.open_citations_telescope.schema academic_observatory_workflows.openalex_telescope academic_observatory_workflows.openalex_telescope.generate_schema academic_observatory_workflows.openalex_telescope.release academic_observatory_workflows.openalex_telescope.schema academic_observatory_workflows.openalex_telescope.tasks academic_observatory_workflows.openalex_telescope.telescope academic_observatory_workflows.openalex_telescope.tests academic_observatory_workflows.openalex_telescope.tests.test_telescope academic_observatory_workflows.orcid_telescope academic_observatory_workflows.orcid_telescope.batch academic_observatory_workflows.orcid_telescope.release academic_observatory_workflows.orcid_telescope.schema academic_observatory_workflows.orcid_telescope.tasks academic_observatory_workflows.orcid_telescope.telescope academic_observatory_workflows.orcid_telescope.tests academic_observatory_workflows.orcid_telescope.tests.test_tasks academic_observatory_workflows.orcid_telescope.tests.test_telescope academic_observatory_workflows.pubmed_telescope academic_observatory_workflows.pubmed_telescope.datafile academic_observatory_workflows.pubmed_telescope.release academic_observatory_workflows.pubmed_telescope.schema academic_observatory_workflows.pubmed_telescope.tasks academic_observatory_workflows.pubmed_telescope.telescope academic_observatory_workflows.pubmed_telescope.tests academic_observatory_workflows.pubmed_telescope.tests.test_tasks academic_observatory_workflows.pubmed_telescope.tests.test_telescope academic_observatory_workflows.ror_telescope academic_observatory_workflows.ror_telescope.release academic_observatory_workflows.ror_telescope.schema academic_observatory_workflows.ror_telescope.tasks academic_observatory_workflows.ror_telescope.telescope academic_observatory_workflows.ror_telescope.tests academic_observatory_workflows.ror_telescope.tests.test_tasks academic_observatory_workflows.ror_telescope.tests.test_telescope academic_observatory_workflows.s5cmd academic_observatory_workflows.scihub_telescope academic_observatory_workflows.scihub_telescope.schema academic_observatory_workflows.scopus_telescope academic_observatory_workflows.scopus_telescope.release academic_observatory_workflows.scopus_telescope.schema academic_observatory_workflows.scopus_telescope.tasks academic_observatory_workflows.scopus_telescope.telescope academic_observatory_workflows.scopus_telescope.tests academic_observatory_workflows.scopus_telescope.tests.test_tasks academic_observatory_workflows.scopus_telescope.tests.test_telescope academic_observatory_workflows.tests academic_observatory_workflows.tests.test_clearbit academic_observatory_workflows.tests.test_github academic_observatory_workflows.tests.test_s5cmd academic_observatory_workflows.tests.test_wikipedia academic_observatory_workflows.tests.test_zenodo academic_observatory_workflows.unpaywall_telescope academic_observatory_workflows.unpaywall_telescope.release academic_observatory_workflows.unpaywall_telescope.schema academic_observatory_workflows.unpaywall_telescope.tasks academic_observatory_workflows.unpaywall_telescope.telescope academic_observatory_workflows.unpaywall_telescope.tests academic_observatory_workflows.unpaywall_telescope.tests.test_tasks academic_observatory_workflows.unpaywall_telescope.tests.test_telescope academic_observatory_workflows.web_of_science_telescope academic_observatory_workflows.web_of_science_telescope.schema academic_observatory_workflows.wikipedia academic_observatory_workflows.zenodo

N

n_items (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityStats attribute) n_outputs (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityHistograms attribute) n_outputs_open (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityHistograms attribute) n_transfer_trys (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) name (academic_observatory_workflows.doi_workflow.queries.SQLQuery attribute) (academic_observatory_workflows.model.Author attribute) (academic_observatory_workflows.model.FieldOfStudy attribute) (academic_observatory_workflows.model.Funder attribute) (academic_observatory_workflows.model.Institution attribute) (academic_observatory_workflows.model.Journal attribute) (academic_observatory_workflows.model.Publisher attribute) (academic_observatory_workflows.model.Repository attribute) (academic_observatory_workflows.pubmed_telescope.tasks.PubmedUpdatefile attribute)

new_funder_template() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) no_guarantees (academic_observatory_workflows.model.PublisherCategories attribute) no_overwrite (academic_observatory_workflows.s5cmd.S5CmdCpConfig attribute) non_concurrent_table_expiry_days (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) normalize_affiliations_and_identifiers() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) normalize_identifier_fields() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) normalize_related_item() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) normalize_to_string_or_none() (in module academic_observatory_workflows.datacite_telescope.datacite_transform)

O

oa (academic_observatory_workflows.model.AccessType attribute) oa_coki (academic_observatory_workflows.model.Paper property) oa_dashboard_subset() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) oa_dashboard_table_id() (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease method) oa_journal (academic_observatory_workflows.model.PublisherCategories attribute) OaDashboardRelease (class in academic_observatory_workflows.oa_dashboard_workflow.release) object_key (academic_observatory_workflows.openalex_telescope.release.ManifestEntry property) (academic_observatory_workflows.openalex_telescope.release.MergedId property) observatory_agg_table_id() (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease method) observatory_api_conn_id (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) ObservatoryDataset (class in academic_observatory_workflows.model) open (academic_observatory_workflows.model.COKIOpenAccess attribute) OpenAlexEntity (class in academic_observatory_workflows.openalex_telescope.release) ORCID_AWS_SUMMARIES_BUCKET (in module academic_observatory_workflows.orcid_telescope.tasks) orcid_batch_names() (in module academic_observatory_workflows.orcid_telescope.release) orcid_batches() (academic_observatory_workflows.orcid_telescope.release.OrcidRelease method) orcid_bucket (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) orcid_directory_paths (academic_observatory_workflows.orcid_telescope.release.OrcidRelease property) ORCID_RECORD_REGEX (in module academic_observatory_workflows.orcid_telescope.batch)

ORCID_REGEX (in module academic_observatory_workflows.orcid_telescope.tasks) orcid_summaries_prefix (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) OrcidBatch (class in academic_observatory_workflows.orcid_telescope.batch) OrcidRelease (class in academic_observatory_workflows.orcid_telescope.release) OrcidTestRecords (class in academic_observatory_workflows.orcid_telescope.tests.test_tasks) (class in academic_observatory_workflows.orcid_telescope.tests.test_telescope) other_internet (academic_observatory_workflows.model.OtherPlatformCategories attribute) other_platform (academic_observatory_workflows.model.COKIOpenAccess attribute) other_platform_categories (academic_observatory_workflows.model.COKIOpenAccess attribute) other_platform_only (academic_observatory_workflows.model.COKIOpenAccess attribute) OtherPlatformCategories (class in academic_observatory_workflows.model) out_path (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease property) out_stream (academic_observatory_workflows.s5cmd.S5Cmd attribute) output_clustering_fields (academic_observatory_workflows.doi_workflow.queries.SQLQuery attribute) output_project_id (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease attribute) output_table (academic_observatory_workflows.doi_workflow.queries.SQLQuery attribute) output_type (academic_observatory_workflows.model.Paper attribute) OUTPUT_TYPES (in module academic_observatory_workflows.model) overwrite_if_newer (academic_observatory_workflows.s5cmd.S5CmdCpConfig attribute) overwrite_if_size (academic_observatory_workflows.s5cmd.S5CmdCpConfig attribute)

P

p_outputs_open (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityHistograms attribute) Paper (class in academic_observatory_workflows.model) PaperList (in module academic_observatory_workflows.model) papers (academic_observatory_workflows.model.Institution attribute) (academic_observatory_workflows.model.ObservatoryDataset attribute) parse_articles() (in module academic_observatory_workflows.pubmed_telescope.tasks) parse_deletes() (in module academic_observatory_workflows.pubmed_telescope.tasks) parse_fundref_registry_rdf() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) parse_json() (academic_observatory_workflows.scopus_telescope.tasks.ScopusJsonParser static method) parse_pubmed_element() (in module academic_observatory_workflows.pubmed_telescope.tasks) parser (in module academic_observatory_workflows.datacite_telescope.datacite_transform) (in module academic_observatory_workflows.openalex_telescope.generate_schema) path_on_ftp (academic_observatory_workflows.pubmed_telescope.datafile.Datafile attribute) pmh_domain (academic_observatory_workflows.model.Repository attribute) PMID (class in academic_observatory_workflows.pubmed_telescope.tasks) preprint (academic_observatory_workflows.model.OtherPlatformCategories attribute) prev_end_date (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) prev_latest_modified_record (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) prev_release_end (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) primary_key (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) project_id (academic_observatory_workflows.doi_workflow.queries.Table attribute) (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow attribute) (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils attribute) (academic_observatory_workflows.tests.test_s5cmd.TestS5Cmd attribute) (academic_observatory_workflows.unpaywall_telescope.tests.test_telescope.TestUnpaywallTelescope attribute)

project_path() (in module academic_observatory_workflows.config) public (academic_observatory_workflows.model.OtherPlatformCategories attribute) publish() (academic_observatory_workflows.tests.test_zenodo.MockZenodo method) (academic_observatory_workflows.zenodo.Zenodo method) publish_new_version() (in module academic_observatory_workflows.zenodo) publish_zenodo_version() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) published_date (academic_observatory_workflows.model.Paper attribute) publisher (academic_observatory_workflows.model.COKIOpenAccess attribute) (academic_observatory_workflows.model.Paper attribute) Publisher (class in academic_observatory_workflows.model) publisher_categories (academic_observatory_workflows.model.COKIOpenAccess attribute) publisher_is_free_to_read (academic_observatory_workflows.model.Paper attribute) publisher_license (academic_observatory_workflows.model.Paper attribute) publisher_only (academic_observatory_workflows.model.COKIOpenAccess attribute) PublisherCategories (class in academic_observatory_workflows.model) PublisherList (in module academic_observatory_workflows.model) publishers (academic_observatory_workflows.model.ObservatoryDataset attribute) PubMedCustomEncoder (class in academic_observatory_workflows.pubmed_telescope.tasks) PubMedRelease (class in academic_observatory_workflows.pubmed_telescope.release) PubMedTest (class in academic_observatory_workflows.pubmed_telescope.tests.test_telescope) PubmedUpdatefile (class in academic_observatory_workflows.pubmed_telescope.tasks)

Q

query (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient attribute) query_table() (in module academic_observatory_workflows.doi_workflow.tests.test_workflow) (in module academic_observatory_workflows.pubmed_telescope.tests.test_telescope)

QUEUE_WAIT_TIME (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtilWorker attribute) QUOTA_EXCEED_ERROR_PREFIX (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient attribute) quota_remaining (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtilWorker attribute) quota_reset_date (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtilWorker attribute)

R

read() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.MockUrlResponse method) README (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) record_count (academic_observatory_workflows.openalex_telescope.release.Meta attribute) recursive_funders() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) region (academic_observatory_workflows.model.Funder attribute) (academic_observatory_workflows.model.Institution attribute) relate_to_countries (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) relate_to_funders (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) relate_to_groups (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) relate_to_institutions (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) relate_to_journals (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) relate_to_members (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) relate_to_publishers (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) release_date (academic_observatory_workflows.oa_dashboard_workflow.tasks.ZenodoVersion attribute) remove_empty_dicts() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) remove_none_from_array() (in module academic_observatory_workflows.openalex_telescope.tasks) remove_nulls_from_list_field() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) remove_text_between_brackets() (in module academic_observatory_workflows.wikipedia) repositories (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow attribute) (academic_observatory_workflows.model.ObservatoryDataset attribute) (academic_observatory_workflows.model.Paper attribute) repository (academic_observatory_workflows.model.Institution attribute) Repository (class in academic_observatory_workflows.model)

repository_dispatch() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) RepositoryList (in module academic_observatory_workflows.model) reset_ftp_counter (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) response (academic_observatory_workflows.scopus_telescope.tests.test_tasks.MockUrlResponse attribute) RESULTS_PER_PAGE (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient attribute) retries (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) retrieve() (academic_observatory_workflows.scopus_telescope.tasks.ScopusClient method) ror_conceptrecid (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.tests.test_telescope.TestRorTelescope attribute) ror_id (academic_observatory_workflows.model.Institution attribute) (academic_observatory_workflows.model.Repository attribute) ROR_SCHEMA_FOLDER (in module academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow) ror_table_id() (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease method) ror_to_ror_hierarchy_index() (in module academic_observatory_workflows.doi_workflow.queries) RorRelease (class in academic_observatory_workflows.ror_telescope.release)

S

s3_uri_parts() (in module academic_observatory_workflows.openalex_telescope.release) S5Cmd (class in academic_observatory_workflows.s5cmd) S5CmdCpConfig (class in academic_observatory_workflows.s5cmd) sa_email (academic_observatory_workflows.tests.test_s5cmd.TestS5Cmd attribute) safe_get_dict() (in module academic_observatory_workflows.openalex_telescope.tasks) save_json() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) save_oa_dashboard_dataset() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) save_pubmed_jsonl() (in module academic_observatory_workflows.pubmed_telescope.tasks) save_pubmed_merged_upserts() (in module academic_observatory_workflows.pubmed_telescope.tasks) save_zenodo_dataset() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) schedule (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) schema_file_path (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity property) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) schema_file_path() (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease method) schema_folder (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) SCHEMA_FOLDER (in module academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks) scopus_conn_ids (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) ScopusClient (class in academic_observatory_workflows.scopus_telescope.tasks) ScopusClientThrottleLimits (class in academic_observatory_workflows.scopus_telescope.tasks) ScopusJsonParser (class in academic_observatory_workflows.scopus_telescope.tasks) ScopusRelease (class in academic_observatory_workflows.scopus_telescope.release) ScopusUtility (class in academic_observatory_workflows.scopus_telescope.tasks) ScopusUtilWorker (class in academic_observatory_workflows.scopus_telescope.tasks) second_run (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.PubMedTest attribute) second_run_folder (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) second_run_main_table (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) second_run_records (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute)

sensor_dag_ids (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) SENSOR_DAG_IDS (in module academic_observatory_workflows.doi_workflow.workflow) server_port (academic_observatory_workflows.ror_telescope.tests.test_telescope.TestRorTelescope attribute) setUp() (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestOaDashboardWorkflow method) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestCreateOrcidManifest method) (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) setup_tables() (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestOaDashboardWorkflow method) sharded (academic_observatory_workflows.doi_workflow.queries.Table attribute) short_circuit() (in module academic_observatory_workflows.pubmed_telescope.tasks) shorten_text_full_sentences() (in module academic_observatory_workflows.wikipedia) slack_conn_id (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) sleep_if_needed() (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtility static method) snapshot_date (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestDownload attribute) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms attribute) (academic_observatory_workflows.doi_workflow.queries.Table attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) snapshot_download_file_path (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) snapshot_expiry_days (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) snapshot_extract_file_path (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) snapshot_release (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) SNAPSHOT_URL (in module academic_observatory_workflows.unpaywall_telescope.tasks) snapshot_url() (in module academic_observatory_workflows.unpaywall_telescope.tasks) sort_events() (in module academic_observatory_workflows.model) sort_schema() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) (in module academic_observatory_workflows.openalex_telescope.generate_schema) source (academic_observatory_workflows.model.Event attribute) sql_queries (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) SQLQuery (class in academic_observatory_workflows.doi_workflow.queries) start_date (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.doi_workflow.workflow.DagParams attribute) (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) (academic_observatory_workflows.openalex_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) start_year (academic_observatory_workflows.oa_dashboard_workflow.tasks.Stats attribute) START_YEAR (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) Stats (class in academic_observatory_workflows.oa_dashboard_workflow.tasks) status_code (academic_observatory_workflows.tests.test_zenodo.MockResponse attribute) subregion (academic_observatory_workflows.model.Institution attribute)

T

Table (class in academic_observatory_workflows.doi_workflow.queries) table_description (academic_observatory_workflows.crossref_fundref_telescope.telescope.DagParams attribute) (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity property) (academic_observatory_workflows.ror_telescope.telescope.DagParams attribute) (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) table_id (academic_observatory_workflows.doi_workflow.queries.Table property) table_name (academic_observatory_workflows.doi_workflow.queries.Aggregation attribute) (academic_observatory_workflows.doi_workflow.queries.Table attribute) Tag (class in academic_observatory_workflows.config) test_add_attributes() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_add_dataset_release() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_bq_compare_schemas() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_bq_load() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) test_build_query() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_change_pubmed_list_structure() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_changefile() (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallUtils method) test_changefile_download_url() (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallUtils method) test_changefiles_url() (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallUtils method) test_check_release_exists() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) test_clean_url() (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestFunctions method) test_cleanup_workflow() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_clear_task_queue() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtility method) test_clearbit_download_logo() (academic_observatory_workflows.tests.test_clearbit.TestClearbitUtils method) test_create_main_table_snapshot_first_run() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_create_main_table_snapshot_second_run() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_create_manifest() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestCreateOrcidManifest method) test_create_new_version() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_create_orcid_batch_manifest() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestCreateOrcidManifest method) test_ctor() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_dag_load() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_telescope.TestCrossrefFundrefTelescope method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope.TestCrossrefMetadataTelescope method) (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestOaDashboardWorkflow method) (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope method) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope method) (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.TestPubMedTelescope method) (academic_observatory_workflows.ror_telescope.tests.test_telescope.TestRorTelescope method) (academic_observatory_workflows.scopus_telescope.tests.test_telescope.TestScopusTelescope method) (academic_observatory_workflows.unpaywall_telescope.tests.test_telescope.TestUnpaywallTelescope method) test_dag_structure() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_telescope.TestCrossrefFundrefTelescope method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope.TestCrossrefMetadataTelescope method) (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestOaDashboardWorkflow method) (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope method) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope method) (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.TestPubMedTelescope method) (academic_observatory_workflows.ror_telescope.tests.test_telescope.TestRorTelescope method) (academic_observatory_workflows.scopus_telescope.tests.test_telescope.TestScopusTelescope method) (academic_observatory_workflows.unpaywall_telescope.tests.test_telescope.TestUnpaywallTelescope method) test_delete_file() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_download() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestDownload method) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_download_datafiles() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_download_failures() (academic_observatory_workflows.tests.test_s5cmd.TestS5Cmd method) test_download_from_bucket() (academic_observatory_workflows.tests.test_s5cmd.TestS5Cmd method) test_download_no_api_key() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestDownload method) test_download_parallel() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_download_period() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_download_worker_download_exit() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_download_worker_download_quota_exceed_retry_exit() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_download_worker_download_uncaught_exception() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_download_worker_empty_retry_exit() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_extract() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) test_fetch_manifest() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_fetch_merged_ids() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_fetch_release() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_fetch_release_400() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) test_fetch_ror_with_http_error() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestFetchRorAffiliations method) test_fetch_ror_with_no_id() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestFetchRorAffiliations method) test_fetch_ror_with_no_matches() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestFetchRorAffiliations method) test_fetch_ror_with_ror_display_name() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestFetchRorAffiliations method) test_fetch_ror_without_ror_display_name() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestFetchRorAffiliations method) test_fetch_wiki_description() (academic_observatory_workflows.tests.test_wikipedia.TestWikipedia method) test_get_affiliations() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusJsonParser method) test_get_authors() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusJsonParser method) test_get_deposition() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_get_identifier_list() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusJsonParser method) test_get_institution_logo() (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestFunctions method) test_get_next_page_url() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_get_reset_date_from_error() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_get_snapshot_file_name() (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallUtils method) test_get_unpaywall_changefiles() (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallUtils method) test_get_versions() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_is_lat_lng_valid() (academic_observatory_workflows.ror_telescope.tests.test_tasks.TestTasks method) test_latest_modified_record_date() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_list_releases() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) test_list_ror_records() (academic_observatory_workflows.ror_telescope.tests.test_tasks.TestTasks method) test_load_data_glob() (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestFunctions method) test_make_draft_version() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_make_entity_stats() (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestFunctions method) test_make_logo_url() (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestFunctions method) test_make_query() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_make_url() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_manifest() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_manifest_entry() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_merge_schema_maps() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_merge_upserts_and_deletes() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_merged_id() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_meta() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_no_results() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestCreateOrcidManifest method) test_openalex_entity() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_orcid_batch_names() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_parse_articles() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_parse_deletes() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_parse_json() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusJsonParser method) test_publish() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_publish_new_version() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_PubMedCustomEncoder() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_remove_text_between_brackets() (academic_observatory_workflows.tests.test_wikipedia.TestWikipedia method) test_retrieve() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_retrieve_exceeded() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_retrieve_max_results_exceeded() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_retrieve_no_next_url() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_retrieve_noresults() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_retrieve_totalresults_zero() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_retrieve_unexpected_httpcode() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_ror_to_ror_hierarchy_index() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) test_run (academic_observatory_workflows.crossref_metadata_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) test_s3_uri_parts() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_save_pubmed_jsonl() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_save_pubmed_merged_upserts() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_scopus_client_user_agent() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusClient method) test_shorten_text_full_sentences() (academic_observatory_workflows.tests.test_wikipedia.TestWikipedia method) test_sleep_if_needed_needed() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_sleep_if_needed_not_needed() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_snapshot_url() (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallUtils method) test_str() (academic_observatory_workflows.tests.test_s5cmd.TestS5CmdCpConfig method) test_tasks() (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestOaDashboardWorkflow method) test_telescope() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_telescope.TestCrossrefFundrefTelescope method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope.TestCrossrefMetadataTelescope method) (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexTelescope method) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.TestOrcidTelescope method) (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.TestPubMedTelescope method) (academic_observatory_workflows.ror_telescope.tests.test_telescope.TestRorTelescope method) (academic_observatory_workflows.scopus_telescope.tests.test_telescope.TestScopusTelescope method) (academic_observatory_workflows.unpaywall_telescope.tests.test_telescope.TestUnpaywallTelescope method)

test_transfer_orcid() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTransferOrcid method) test_transfer_orcid_fails() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTransferOrcid method) test_transform() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms method) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_transform_file() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms method) (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallTransform method) test_transform_item() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms method) test_transform_item_date_parts() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms method) test_transform_item_date_parts_list() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms method) test_transform_item_date_parts_none() (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms method) test_transform_object() (academic_observatory_workflows.openalex_telescope.tests.test_telescope.TestOpenAlexUtils method) test_transform_orcid_record_error_record() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_transform_orcid_record_invalid_key_record() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_transform_orcid_record_mismatched_orcid() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_transform_orcid_record_valid_record() (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTasks method) test_transform_pubmed() (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils method) test_transform_ror() (academic_observatory_workflows.ror_telescope.tests.test_tasks.TestTasks method) test_transform_row() (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallTransform method) test_trigger_repository_dispatch() (academic_observatory_workflows.tests.test_github.TestGithub method) test_unpaywall_filename_to_datetime() (academic_observatory_workflows.unpaywall_telescope.tests.test_tasks.TestUnpaywallUtils method) test_update() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_update_reset_date() (academic_observatory_workflows.scopus_telescope.tests.test_tasks.TestScopusUtilWorker method) test_upload_downloaded() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) test_upload_failures() (academic_observatory_workflows.tests.test_s5cmd.TestS5Cmd method) test_upload_file() (academic_observatory_workflows.tests.test_zenodo.TestZenodo method) test_upload_to_bucket() (academic_observatory_workflows.tests.test_s5cmd.TestS5Cmd method) test_upload_transformed() (academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks.TestTasks method) (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTasks method) test_workflow() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) (academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow.TestOaDashboardWorkflow method) TestClearbitUtils (class in academic_observatory_workflows.tests.test_clearbit) TestConfig (class in academic_observatory_workflows.config) TestCreateOrcidManifest (class in academic_observatory_workflows.orcid_telescope.tests.test_tasks) TestCrossrefFundrefTelescope (class in academic_observatory_workflows.crossref_fundref_telescope.tests.test_telescope) TestCrossrefMetadataTelescope (class in academic_observatory_workflows.crossref_metadata_telescope.tests.test_telescope) TestDoiWorkflow (class in academic_observatory_workflows.doi_workflow.tests.test_workflow) TestDownload (class in academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks) TestFetchRorAffiliations (class in academic_observatory_workflows.doi_workflow.tests.test_workflow) TestFunctions (class in academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow) TestGithub (class in academic_observatory_workflows.tests.test_github) TestOaDashboardWorkflow (class in academic_observatory_workflows.oa_dashboard_workflow.tests.test_workflow) TestOpenAlexTelescope (class in academic_observatory_workflows.openalex_telescope.tests.test_telescope) TestOpenAlexUtils (class in academic_observatory_workflows.openalex_telescope.tests.test_telescope) TestOrcidTelescope (class in academic_observatory_workflows.orcid_telescope.tests.test_telescope) TestPubMedTelescope (class in academic_observatory_workflows.pubmed_telescope.tests.test_telescope) TestPubMedUtils (class in academic_observatory_workflows.pubmed_telescope.tests.test_tasks) TestRorTelescope (class in academic_observatory_workflows.ror_telescope.tests.test_telescope) TestS5Cmd (class in academic_observatory_workflows.tests.test_s5cmd) TestS5CmdCpConfig (class in academic_observatory_workflows.tests.test_s5cmd) TestScopusClient (class in academic_observatory_workflows.scopus_telescope.tests.test_tasks) TestScopusClient.MockMetadata (class in academic_observatory_workflows.scopus_telescope.tests.test_tasks) TestScopusJsonParser (class in academic_observatory_workflows.scopus_telescope.tests.test_tasks) TestScopusTelescope (class in academic_observatory_workflows.scopus_telescope.tests.test_telescope) TestScopusUtility (class in academic_observatory_workflows.scopus_telescope.tests.test_tasks) TestScopusUtilWorker (class in academic_observatory_workflows.scopus_telescope.tests.test_tasks) TestTasks (class in academic_observatory_workflows.crossref_fundref_telescope.tests.test_tasks) (class in academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks) (class in academic_observatory_workflows.orcid_telescope.tests.test_tasks) (class in academic_observatory_workflows.ror_telescope.tests.test_tasks) TestTransferOrcid (class in academic_observatory_workflows.orcid_telescope.tests.test_tasks) TestTransforms (class in academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks) TestUnpaywallTelescope (class in academic_observatory_workflows.unpaywall_telescope.tests.test_telescope) TestUnpaywallTransform (class in academic_observatory_workflows.unpaywall_telescope.tests.test_tasks) TestUnpaywallUtils (class in academic_observatory_workflows.unpaywall_telescope.tests.test_tasks) TestWikipedia (class in academic_observatory_workflows.tests.test_wikipedia) TestZenodo (class in academic_observatory_workflows.tests.test_zenodo) third_run (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.PubMedTest attribute) timeout (academic_observatory_workflows.zenodo.Zenodo attribute) timestamp_fields (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) title (academic_observatory_workflows.model.Paper attribute) to_affiliations_list() (in module academic_observatory_workflows.model) to_dict() (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease method) (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease method) (academic_observatory_workflows.doi_workflow.release.DOIRelease method) (academic_observatory_workflows.oa_dashboard_workflow.release.OaDashboardRelease method) (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityHistograms method) (academic_observatory_workflows.oa_dashboard_workflow.tasks.EntityStats method) (academic_observatory_workflows.oa_dashboard_workflow.tasks.Histogram method) (academic_observatory_workflows.oa_dashboard_workflow.tasks.Stats method) (academic_observatory_workflows.oa_dashboard_workflow.tasks.ZenodoVersion method) (academic_observatory_workflows.openalex_telescope.release.Manifest method) (academic_observatory_workflows.openalex_telescope.release.ManifestEntry method) (academic_observatory_workflows.openalex_telescope.release.MergedId method) (academic_observatory_workflows.openalex_telescope.release.Meta method) (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity method) (academic_observatory_workflows.orcid_telescope.release.OrcidRelease method) (academic_observatory_workflows.pubmed_telescope.datafile.Datafile method) (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease method) (academic_observatory_workflows.pubmed_telescope.tasks.PMID method) (academic_observatory_workflows.pubmed_telescope.tasks.PubmedUpdatefile method) (academic_observatory_workflows.ror_telescope.release.RorRelease method) (academic_observatory_workflows.scopus_telescope.release.ScopusRelease method) (academic_observatory_workflows.unpaywall_telescope.release.Changefile method) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease method) to_str() (academic_observatory_workflows.pubmed_telescope.tasks.PMID method) transfer_attempts (academic_observatory_workflows.orcid_telescope.telescope.DagParams attribute) (academic_observatory_workflows.orcid_telescope.tests.test_tasks.TestTransferOrcid attribute) transfer_blob_pattern() (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease method) transfer_manifest_uri (academic_observatory_workflows.openalex_telescope.release.OpenAlexEntity attribute) transfer_orcid() (in module academic_observatory_workflows.orcid_telescope.tasks) transform() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) (in module academic_observatory_workflows.datacite_telescope.datacite_transform) (in module academic_observatory_workflows.openalex_telescope.tasks) (in module academic_observatory_workflows.orcid_telescope.tasks) (in module academic_observatory_workflows.ror_telescope.tasks) (in module academic_observatory_workflows.scopus_telescope.tasks) transform_baseline_file_path (academic_observatory_workflows.pubmed_telescope.datafile.Datafile property) transform_blob_name (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease property) (academic_observatory_workflows.ror_telescope.release.RorRelease property) (academic_observatory_workflows.scopus_telescope.release.ScopusRelease property) transform_delete_file (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) transform_delete_file_path (academic_observatory_workflows.pubmed_telescope.datafile.Datafile property) transform_dir (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) transform_file() (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) (in module academic_observatory_workflows.openalex_telescope.tasks) transform_file_name (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease attribute) (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) (academic_observatory_workflows.scopus_telescope.release.ScopusRelease attribute) transform_file_path (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease property) (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) (academic_observatory_workflows.scopus_telescope.release.ScopusRelease attribute) (academic_observatory_workflows.unpaywall_telescope.release.Changefile property) transform_files_regex (academic_observatory_workflows.crossref_metadata_telescope.release.CrossrefMetadataRelease attribute) transform_geo_locations() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) transform_item() (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) transform_object() (in module academic_observatory_workflows.datacite_telescope.datacite_transform) (in module academic_observatory_workflows.openalex_telescope.tasks) transform_orcid_record() (in module academic_observatory_workflows.orcid_telescope.tasks) transform_pubmed() (in module academic_observatory_workflows.pubmed_telescope.tasks) transform_ror() (in module academic_observatory_workflows.ror_telescope.tasks) transform_to_db_format() (in module academic_observatory_workflows.scopus_telescope.tasks) transform_upsert_file (academic_observatory_workflows.orcid_telescope.batch.OrcidBatch attribute) transform_upsert_file_path (academic_observatory_workflows.pubmed_telescope.datafile.Datafile property) transform_uri (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease property) (academic_observatory_workflows.ror_telescope.release.RorRelease property) transformed_data_file (academic_observatory_workflows.crossref_metadata_telescope.tests.test_tasks.TestTransforms attribute) traverse_ancestors() (in module academic_observatory_workflows.doi_workflow.queries) trigger_repository_dispatch() (in module academic_observatory_workflows.github) type (academic_observatory_workflows.model.Paper attribute) types (academic_observatory_workflows.model.Institution attribute)

U

unknown (academic_observatory_workflows.model.OtherPlatformCategories attribute) unpaywall_base_url (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) UNPAYWALL_BASE_URL (in module academic_observatory_workflows.unpaywall_telescope.tasks) unpaywall_conn_id (academic_observatory_workflows.unpaywall_telescope.telescope.DagParams attribute) unpaywall_filename_to_datetime() (in module academic_observatory_workflows.unpaywall_telescope.tasks) unpaywall_transform_file() (in module academic_observatory_workflows.unpaywall_telescope.tasks) unpaywall_transform_row() (in module academic_observatory_workflows.unpaywall_telescope.tasks) UnpaywallRelease (class in academic_observatory_workflows.unpaywall_telescope.release) update() (academic_observatory_workflows.tests.test_zenodo.MockZenodo method) (academic_observatory_workflows.zenodo.Zenodo method) update_db() (academic_observatory_workflows.doi_workflow.tests.test_workflow.TestDoiWorkflow method) update_reset_date() (academic_observatory_workflows.scopus_telescope.tasks.ScopusUtility static method) update_table_descriptions() (in module academic_observatory_workflows.doi_workflow.tasks) updated_date (academic_observatory_workflows.openalex_telescope.release.ManifestEntry property) (academic_observatory_workflows.openalex_telescope.release.MergedId property) updatefiles (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease property) updatefiles_bq_delete_records() (in module academic_observatory_workflows.pubmed_telescope.tasks) updatefiles_bq_load_delete_table() (in module academic_observatory_workflows.pubmed_telescope.tasks) updatefiles_bq_load_upsert_table() (in module academic_observatory_workflows.pubmed_telescope.tasks) updatefiles_bq_upsert_records() (in module academic_observatory_workflows.pubmed_telescope.tasks) updatefiles_download() (in module academic_observatory_workflows.pubmed_telescope.tasks) updatefiles_merge_upserts_deletes() (in module academic_observatory_workflows.pubmed_telescope.tasks) updatefiles_path (academic_observatory_workflows.pubmed_telescope.tests.test_tasks.TestPubMedUtils attribute) (academic_observatory_workflows.pubmed_telescope.tests.test_telescope.PubMedTest attribute) updatefiles_transform() (in module academic_observatory_workflows.pubmed_telescope.tasks) updatefiles_upload_downloaded() (in module academic_observatory_workflows.pubmed_telescope.tasks) updatefiles_upload_merged_delete_records() (in module academic_observatory_workflows.pubmed_telescope.tasks)

updatefiles_upload_merged_upsert_records() (in module academic_observatory_workflows.pubmed_telescope.tasks) upload_dataset() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) upload_downloaded() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) upload_file() (academic_observatory_workflows.tests.test_zenodo.MockZenodo method) (academic_observatory_workflows.zenodo.Zenodo method) upload_files() (in module academic_observatory_workflows.openalex_telescope.tasks) upload_folder_to_s3() (in module academic_observatory_workflows.openalex_telescope.tests.test_telescope) upload_institution_ids() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) upload_schema() (in module academic_observatory_workflows.openalex_telescope.tasks) upload_to_bucket() (academic_observatory_workflows.s5cmd.S5Cmd method) upload_transformed() (in module academic_observatory_workflows.crossref_fundref_telescope.tasks) (in module academic_observatory_workflows.crossref_metadata_telescope.tasks) (in module academic_observatory_workflows.orcid_telescope.tasks) upsert_blob_glob (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) upsert_files (academic_observatory_workflows.orcid_telescope.release.OrcidRelease property) upsert_table (academic_observatory_workflows.orcid_telescope.tests.test_tasks.OrcidTestRecords attribute) (academic_observatory_workflows.orcid_telescope.tests.test_telescope.OrcidTestRecords attribute) upsert_table_description (academic_observatory_workflows.pubmed_telescope.telescope.DagParams attribute) upsert_table_file_path (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) upsert_table_uri (academic_observatory_workflows.orcid_telescope.release.OrcidRelease attribute) (academic_observatory_workflows.unpaywall_telescope.release.UnpaywallRelease attribute) upserts (academic_observatory_workflows.pubmed_telescope.tasks.PubmedUpdatefile attribute) uri_identifier_regex (academic_observatory_workflows.s5cmd.S5Cmd attribute) url (academic_observatory_workflows.crossref_fundref_telescope.release.CrossrefFundrefRelease attribute) (academic_observatory_workflows.openalex_telescope.release.MergedId attribute) (academic_observatory_workflows.ror_telescope.release.RorRelease attribute) url_domain (academic_observatory_workflows.model.Repository attribute)

V

value (academic_observatory_workflows.pubmed_telescope.tasks.PMID attribute) version (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute)

Version (academic_observatory_workflows.pubmed_telescope.tasks.PMID attribute) view (academic_observatory_workflows.scopus_telescope.telescope.DagParams attribute)

W

WIKI_MAX_TITLES (in module academic_observatory_workflows.wikipedia)

write_as_single_field (academic_observatory_workflows.pubmed_telescope.tasks.PubMedCustomEncoder attribute)

Y

year_first_run (academic_observatory_workflows.pubmed_telescope.release.PubMedRelease attribute)

yield_data_glob() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) yield_jsonl() (in module academic_observatory_workflows.datacite_telescope.datacite_transform)

Z

Zenodo (class in academic_observatory_workflows.zenodo) zenodo_conn_id (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute) zenodo_host (academic_observatory_workflows.oa_dashboard_workflow.workflow.DagParams attribute)

zenodo_subset() (in module academic_observatory_workflows.oa_dashboard_workflow.tasks) zenodo_versions (academic_observatory_workflows.oa_dashboard_workflow.tasks.Stats attribute) ZenodoVersion (class in academic_observatory_workflows.oa_dashboard_workflow.tasks)