academic_observatory_workflows.pubmed_telescope.tests.test_telescope

Attributes

FIXTURES_FOLDER

Classes

PubMedTest

TestPubMedTelescope

Tests for the Pubmed telescope

Functions

query_table(→ List[Dict])

Query a BigQuery table, sorting the results and returning results as a list of dicts.

Module Contents

academic_observatory_workflows.pubmed_telescope.tests.test_telescope.FIXTURES_FOLDER[source]
academic_observatory_workflows.pubmed_telescope.tests.test_telescope.query_table(table_id: str, select_columns: str, order_by_field: str) → List[Dict][source]

Query a BigQuery table, sorting the results and returning results as a list of dicts.

Parameters:

  • table_id – the table id.

  • select_columns – Columns to pull from the table.

  • order_by_field – what field or fields to order by.

Returns:

the table rows.

class academic_observatory_workflows.pubmed_telescope.tests.test_telescope.PubMedTest[source]
ftp_server_url = 'localhost'[source]
ftp_port = 80[source]
baseline_path = '/pubmed/baseline/'[source]
updatefiles_path = '/pubmed/updatefiles/'[source]
first_run[source]
second_run[source]
third_run[source]
class academic_observatory_workflows.pubmed_telescope.tests.test_telescope.TestPubMedTelescope(*args, **kwargs)[source]

Bases: observatory_platform.sandbox.test_utils.SandboxTestCase

Tests for the Pubmed telescope

dag_id = 'pubmed'[source]
test_dag_structure()[source]

Test PubMed DAG structure.

test_dag_load()[source]

Test that the PubMed DAG can be loaded from a DAG bag.

test_telescope()[source]

Test the PubMed Telescope end to end